taokz / BiomedGPT

BiomedGPT: A Generalist Vision-Language Foundation Model for Diverse Biomedical Tasks

https://www.nature.com/articles/s41591-024-03185-2

taokz/BiomedGPT Issues

Feasibility of Fine-tuning for Image Generation Tasks
Updated 7 days ago5
producing image embeddings using own image dataset
Updated 10 days ago2
Code and model for 3D medical image classification
Updated 15 days ago1
Does this project only work on linux?
Updated 15 days ago6
evaluate question
Updated 15 days ago1
BPE Directory issue
Closed 15 days ago1
Pretrained checkpoints
Closed 18 days ago1
What does the fairseq file in the train.exe file mean?
Updated 18 days ago3
where to find checkpoint_best.pt mentioned in evaluate_medmnist.sh
Closed 18 days ago6
RunTime error with fairseq - Zero Shot image captioning
Closed 21 days ago3
issue of [cannot import name 'TransformerEncoderLayer' from 'fairseq.modules']
Closed 21 days ago1
I encountered a problem when reproducing the VQA task
Closed 21 days ago2
Unexpected Prediction Result on Zero-Shot VQA Task
Closed 21 days ago1
evaluation error
Closed 21 days ago4
RuntimeError: Unexpected key(s) in state_dict when loading OFAModel
Updated 21 days ago5
fine-tuning
Closed 21 days ago1
how can I reproduce your performance?
Closed 21 days ago1
can one use dicom images for training instead of jpg
Closed 21 days ago1
The issue of pathVQA pkl file
Closed 21 days ago1
Natural language tasks
Closed 21 days ago1
issue of "trainval_ans2label.pkl" for medMNIST validation
Closed 21 days ago3
hi！I am wondering how to identify categories of questions since I cannot find related info in the test.tsv file.
Closed 2 months ago2
performance
Closed 2 months ago2
Error in loading state_dict for OFAModel
Closed 2 months ago2
Link for Instruction-Tuned Checkpoints is expired
Closed 2 months ago2
Docker build fails due to conda conflicts
Closed 2 months ago2
medmnist evaluate failed
Updated 2 months ago16
Molecule QA
Closed 2 months ago2
How can I obtain this peir_gross_test.tsv? I did not find this data in your project.
Closed 3 months ago1
medmnist how does it work
Closed 3 months ago4
Meet error when install about fairseq
Updated 3 months ago7
error reporting
Updated 3 months ago3
About Evaluation
Closed 3 months ago2
How can we do a simple question-answering?
Closed 8 months ago1
train_medmnist.sh
Closed 3 months ago1
Evaluation test.tsv format
Closed 6 months ago1
train.py: error: unrecognized arguments: --warmup-ratio=0.04
Closed 6 months ago3
Peir Gross Image Captioning - /type2ans.json' not found and in zero shot it throwing unsupported Error
Closed 7 months ago5
GCC Failure during Conda Installation
Closed 7 months ago2
not able to run-> conda env create -f biomedgpt.yml
Closed 7 months ago1
Pretrained-base higher than finetuned-base on Slake
Closed 7 months ago3
No such file or directory: '/data/omnimed/pretrain_data/negative_sample/type2ans.json'
Closed 8 months ago6
RuntimeError: result type Float can't be cast to the desired output type Long
Closed 8 months ago5
Some questions about recall and precision.
Closed 9 months ago3
omegaconf.errors.ConfigAttributeError: Key 'use_ema_weights_to_init_param' is not in struct
Closed 9 months ago1
RuntimeError: CUDA error: device-side assert triggered
Updated 10 months ago2
'InverseSquareRootSchedule' object has no attribute 'reinit'
Closed 10 months ago5
Questions about performance metrics on Slake and PathVQA datasets.
Closed 10 months ago
Issue about preparing dataset for pre-training ?
Closed 10 months ago5
Will the data be released or requested?
Closed 10 months ago1