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tanghaibao / goatools

Python library to handle Gene Ontology (GO) terms

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render DAG w JSON

chrispam10 opened this issue · comments

commented

Hi,

Is there any way to use any JSON files generated that have annotations for nodes and edges to render the DAG plot as well?

commented

@chrispam10

It is a bit unclear from your question - are you asking whether goatools can generate such JSON file? or use such JSON file as input?

commented

Hi @tanghaibao

Sorry, I meant using JSON file as input for DAG. Also, do you have any suggestions on how to transform the obo file and JSON file into a tabular format where in a column I have the GO term ancestor name and the next column its descendants? I'm not familiar with these operations.

Thanks!