taneishi

MathJax-src

MathJax source code for version 3 and beyond

gflownet

Generative Flow Networks

PeSTo

Geometric deep learning method to predict protein binding interfaces from a protein structure.

NRI

Neural relational inference for interacting systems - pytorch

NRI-MD

Neural relational inference for molecular dynamics simulations

MAT

The official implementation of the Molecule Attention Transformer.

AlignShift

[MICCAI'21 & MICCAI'20] A Codebase for Universal Lesion Detection (DeepLesion SOTA)

torchmd

End-To-End Molecular Dynamics (MD) Engine using PyTorch

LesionHarvester

DeepLesion

Singularity_Deeplesion

EBM_torch

Energy Based Models in PyTorch

ocular-disease-intelligent-recognition-deep-learning

ODIR-2019. Ocular Disease Intelligent Recognition Through Deep Learning Architectures

CheXNet-Pytorch

Solving CheXNet using a DenseNet121 in Pytorch

UniRep

UniRep model, usage, and examples.

esm

Evolutionary Scale Modeling (esm): Pretrained language models for proteins

Deep-Belief-Network-pytorch

This repository has implementation and tutorial for Deep Belief Network

deep_gcns_torch

Pytorch Repo for DeepGCNs (ICCV'2019 Oral, TPAMI'2021), DeeperGCN (arXiv'2020) and GNN1000(ICML'2021): https://www.deepgcns.org

bert-loves-chemistry

bert-loves-chemistry: a repository of HuggingFace models applied on chemical SMILES data for drug design, chemical modelling, etc.

alphafold2

To eventually become an unofficial Pytorch implementation / replication of Alphafold2, as details of the architecture get released

mo434-ODIR-5K

DL Project concerning the ODIR-5K dataset

MolBERT

ProtTrans

ProtTrans is providing state of the art pretrained language models for proteins. ProtTrans was trained on thousands of GPUs from Summit and hundreds of Google TPUs using Transformers Models.

HTML-SDF-Viewer

Simple HTML/Javascript viewer for examing SDF files with data

DietNetworks

TCGA_Benchmark

TCGA Benchmark Tasks for Clinical Attribute Prediction based on Genome

Resnet50_DDP

coach

Reinforcement Learning Coach by Intel AI Lab enables easy experimentation with state of the art Reinforcement Learning algorithms

CheXNet-with-localization

Weakly Supervised Learning for Findings Detection in Medical Images

fairseq

Facebook AI Research Sequence-to-Sequence Toolkit written in Python.

VFVS

VirtualFlow for Virtual Screening