tanaylab

mars_annotations

IIAS2023

MARS-SEQ

MARS-SEQ pipeline (scrna module from tlsrc)

embflow

Dnmt3ab_MEEB

sc5mc

cppd

PBAT capture probe designer package

mcbrowse

Metacells Browsing

tet-gastrulation

TET gastrulation paper analysis code

li_et_al_cell_2018_melanoma_scrna

shaman

The shaman package - sampling HiC contact matrices for a-parametric normalization

schic2

metabric_rrbs

methylayer

Tumor Expression-Methylation Layerd Analysis

jupyter-shiny-proxy

Jupyter extension for proxying shiny server

Meir_et_al_nat_plants_2021_SMT

slanter

Slanted Matrices and Ordered Clustering

netta-celk

The Elastic stack (ELK) powered by Docker and Compose.

repsc

tanaylab.github.io

gpwm

Motif analysis using the Misha package

Meir_et_al_nat_gen_2020_clonemem

Luria-Delbruck design, comparing transcriptome, methylome and exome of single-cells to hundreds of single-cell-derived clones

repguide

tomato_SMT

Temporal dissection of tomato shoot apical single-meristem-transcriptomes during transition to flowering

scikit-learn

scikit-learn: machine learning in Python

bissli2

Map Bisulfite Converted Reads

reputils

brocks_et_al_nat_com_2019_epitherapy_scrna

tgconfig

The goal of tgconfig is to provide infrastructure for managing package parameters, (inspired by https://github.com/r-lib/pkgconfig)

hematopoiesis2018