tanaylab / metacell

Metacell - Single-cell mRNA Analysis

https://tanaylab.github.io/metacell

tanaylab/metacell Issues

mcell_mc2d_plot bug
Updated 3 months ago1
Error in mcell_add_cgraph_from_mat_bknn / tmp permisson denied
Updated 3 months ago
function `tgs_cor_graph()` is missing in package
Updated 3 months ago1
Error Occured when Running metacell Usage Guide Page
Updated 3 months ago1
a lot of metacells have no similarity
Updated 4 months ago
Class of mc number here should be character but not numeric
Updated 7 months ago
mcell_add_gene_stat
Updated 8 months ago3
Assign id to metacell object
Updated a year ago2
import .h5ad or .loom formats
Updated a year ago3
mcell_mc_hierarchy while condition
Updated a year ago1
dysfunction and activation score
Updated a year ago
install scdb, download test
Updated a year ago
Batch
Closed a year ago
mc2d_force_knn fails if mc wasn't colorized beforehand
Updated 2 years ago1
Log Transformation
Closed 2 years ago
how can i read seurat object into metacell?
Closed 4 years ago3
Question: Assign a metacell
Updated 2 years ago1
mcell_mc_plot_marks creates incorrect annotation colorbar when using focus_mcs
Updated 2 years ago
`mcell_mc_split_filt` followed by `mcell_mc2d_force_knn` : length mismatch errror
Closed 3 years ago5
How to get the actual raw cells behind a metacell?
Updated 2 years ago3
Function to extract mat class with mc and mc2d
Closed 2 years ago1
Can't download the tutorial data
Closed 2 years ago2
mcell_mc_export_tab->Source Code may need to be modified
Closed 2 years ago3
Coudn't install metacell on windows
Closed 2 years ago1
comp mc graph using the graph RGdb_50_graphs and K 20 Error in confu/csize2 : non-conformable arrays
Updated 2 years ago
install issue
Closed 2 years ago1
code error in gstats.r
Updated 2 years ago1
Could we add the proteomic data into metacell
Updated 2 years ago
How to deal with data with clear batch effect?
Closed 3 years ago3
linear pipeline collapse with Error due to undefined variable 'marks_fn' used to coloring mc
Updated 2 years ago
Is it possible to get knn index file from Metacell?
Updated 2 years ago
can we get figures directly instead of checking the output file?
Updated 2 years ago
Build metacell using features resulting from dimension reduction methodse.g. principle components
Updated 3 years ago
Error in `mcell_mc_plot_hierarchy`
Updated 3 years ago
e_gc colnames are not upadted in mc_set_outlier_mc
Closed 3 years ago
Installation RSvgDevice dependency error
Closed 3 years ago3
How to extract list of genes in a metacell
Closed 3 years ago4
`scm_merge_mats()` error when setting slots to `NULL`
Closed 3 years ago2
inconsistency of geometric mean calculation in paper and in code
Closed 3 years ago1
R kernel keeps dying when running mcell_mc_from_coclust_balanced()
Updated 3 years ago7
Function `mcell_mc_plot_by_factor` depends on undeclared parameter
Closed 3 years ago2
mcell_mat_rpt_cor_anchors error
Closed 3 years ago2
mcell_mc_from_coclust_balanced error
Closed 3 years ago2
A minor issue with gset_import_table
Closed 3 years ago2
Cluster assignment is produced for only a subset of the cells post QC
Closed 3 years ago2
Plots won't show on RStudio
Closed 3 years ago
Unable to install MetaCell
Closed 3 years ago1
Error in mcell_plot_outlier_heatmap
Updated 3 years ago
Unexpressed genes X plot enrichment bar graph
Updated 3 years ago1
Gene quantification in metacells
Closed 3 years ago1