tanaylab / mcATAC

Metacell analysis for ATAC data

https://tanaylab.github.io/mcATAC/

tanaylab/mcATAC Issues

scc_to_peaks malfunction?
Closed 2 months ago
McPeaks export to h5ad remove slots
Updated 4 months ago
mcc_to_tracks promts(...) prompts Error message even when overwrite=T
Closed a year ago2
mct_plot_region running out of memory
Closed 2 years ago3
solve unnamed peaks set without raising Error when creating McPeaks object from McCounts
Updated 2 years ago1
generate_motif_pssm_matrix
Updated 2 years ago1
@param `atac` for get_peak_coverage_stats?
Closed 2 years ago3
plot_atac_rna_markers looks for colors in cell_type column
Closed 2 years ago1
many functions resulted in Error because of atac_mc@mat is 'dgCMatrix'
Closed 2 years ago2
plot_tracks_at_locus issue
Closed 2 years ago1
mcc_to_mcatac
Closed 2 years ago1
Are metacell numbers 0- or 1-based
Closed 2 years ago4
mcc_to_tracks
Closed 2 years ago3
mcc_to_tracks
Closed 2 years ago1
write_sc_counts_from_fragments -> scc_read
Closed 2 years ago
`atac_ignore_peaks` fails when given peak names
Closed 2 years ago2
generate_pheatmap_annotation returns error when fed with a cell type annotation vector
Closed 2 years ago