Beast code in Giters

Rene's repositories

humanDPE

Identification of a functional downstream core promoter element in human promoters using an Expectation-Maximization algorithm

Language:RGPL-3.02 10

covidRibosomeFootprints

Code to analyse ribosome footprint data for SARS-CoV-2. Results present in manuscript "Structural basis of ribosomal frameshifting during translation of the SARS-CoV-2 RNA genome"

Language:R010

filterBam

Utilities to filter and count bam or bed files

Language:Python000

findGuides

Python scripts to find cas9 guides on a list of genes

Language:R000

ROS_highFatHighSugarDiet

Scripts used for the ribo-seq analysis in "ROS-induced translation impairment underlies ZAKa-mediated metabolic decline in obesity and aging"

MIT010

smg6ExpressionData

Script to generate figures for the Katsioudi et al. paper

Language:R010

StalledRibosomesLeucine

Scripts for: Stalled ribosomes are signals for metabolic regulation by the ribotoxic stress response

Language:RMIT010