takyamamoto's starred repositories
schedule_free
Schedule-Free Optimization in PyTorch
BlenderSpike
A Blender add-on to bring animations from NEURON
NeuroMorphoVis
A lightweight, interactive, extensible and cross-platform framework for building, visualizing and analyzing digital reconstructions of neuronal morphology skeletons extracted from microscopy stacks.
scikit-dimension
A Python package for intrinsic dimension estimation
voxelwise_tutorials
Voxelwise modeling tutorial from the Gallantlab.
deep-fMRI-dataset
Code accompanying data release of natural language listening fMRI data (LeBel et al.)
RotatingFeatures
Code for the paper: Rotating Features for Object Discovery
denseweight
The imbalanced regression method DenseWeight produces sample weights for data points in regression tasks so that there is a higher emphasis on ML model performance for rare (and often extreme) data points in comparison to common data points. This repository provides a Python package with which one can easily use DenseWeight.
stsb-multi-mt
Machine translated multilingual STS benchmark dataset.
Building_Transformers_from_Neurons_and_Astrocytes
Two self-contained notebooks to perform "weight transformer" from pretrained Transformer model to neuron-astrocyte network.
Heavy_tailed_connectivity
Code and data used to perform the analyses in the paper "Heavy-tailed neuronal connectivity arises from Hebbian self-organization"
freesurfer-surface
Python Library to Read and Write Surface Files in Freesurfer's TriangularSurface Format
critiques-of-evolution-thinking
書籍『進化思考』を批判した書籍のサポートページ
rpy2_wrapper
Rpy2 wrapper for statistical analysis by R