t-silvers

bifido_summary

casskit

casskit: cancer association studies toolkit

dos_abstract_book

epiclock

EpigeneticRegulators_MouseGastrulation

Epigenetic regulator function through mouse gastrulation

fraserhead

Fraser lab slackbot for onboarding new lab members.

iSA

in silico Strand Annealing

kerr_mean_field_paper_2021

Mann-Kendall-Trend

Simple python function to run Mann-Kendall Test for Trend

manuscript-stub

mm-dev-data-explorer

OpenOmics

A bioinformatics API and web-app to integrate multi-omics datasets & interface with public databases.

plaac

Prion-Like Amino Acid Composition

popgen-notes

Population genetics notes

public_cancer_db

pyNBS

Python 2.7 implementation of network-based stratification (NBS) algorithm from Hofree et al (Nature Methods 2013)

pypath

Python module for prior knowledge integration. Builds databases of signaling pathways, enzyme-substrate interactions, complexes, annotations and intercellular communication roles.

pyrty

Use R snippets as python functions. Manage R dependencies separately.

ratio_corr_gammas

RCK

RCK: Reconstruction of clone- and haplotype-specific Cancer Karyotypes

SAME

Somatic mutation Association test with Measurement Errors

sequencing-comparison-aviti-illumina

thePrecisionLasso

implementation for the Precision Lasso

TLS

Mouse embryonic stem cells self-organize into trunk-like structures with neural tube and somites

xenaPython

Python API for Xena Hub

yaglm

A python package for penalized generalized linear models that supports fitting and model selection for structured, adaptive and non-convex penalties.