Tim Pollington's repositories
INLA-Workshop-Glasgow2019
Workshop on spatial and spatio-temporal models using INLA
tau-statistic-speedup
An optimised implementation of the tau statistic (relative prevalence ratio form), originally from R's IDSpatialStats package.
covid-19-immunity
Differential equation models that incorporate waning immunity
COVID19
Estimating the generation interval for COVID-19
developments_tau_statistic
Code analysis for "Developments in statistical inference when assessing spatiotemporal disease clustering with the tau statistic" Pollington et al.
docs
Documentation for rtools40 and R for Windows
epidemic-deconvolution
Example code for deconvolving epidemic time series
EpiEstim
A tool to estimate time varying instantaneous reproduction number during epidemics
epiforecasts.github.io
central website
neldermead
:exclamation: This is a read-only mirror of the CRAN R package repository. neldermead — R Port of the 'Scilab' Neldermead Module
param-estimation-SIR
Example R and Matlab code for ML estimation with an SIR model, as well as for examining identifiability and uncertainty using the Fisher information matrix and profile likelihoods.
TableView.jl
A Tables.jl compatible table viewer based on ag-grid
TimerOutputs.jl
Formatted output of timed sections in Julia
VLSpatiotemporalModelling
Code for 'Inferring transmission trees to guide targeting of interventions against visceral leishmaniasis and post–kala-azar dermal leishmaniasis'