Beast code in Giters

Zachary A Szpiech's repositories

selscan

Haplotype based scans for selection

Language:CGPL-3.0109 12 116

gmm

Gaussian Mixture Model estimation

Language:C++GPL-3.09 3 1

lassip

LASSI-Plus: A program to calculate haplotype frequency spectrum statistics

Language:C++GPL-3.0700

garlic

Genomic Autozygosity Regions Likelihood Inference and Classification

Language:CGPL-3.0600

asd

Calculate allele sharing distances

Language:C++GPL-3.0400

predictGMAP

A small program for interpolating genetic map distances

Language:C++GPL-3.0300

param_parser

Command line argument parsing

Language:C++GPL-3.0200

biol610

intro to programming for IE2 evolution students

Language:Jupyter NotebookGPL-3.0100

pfb2019

Programming for Biology 2019

Language:Python100

ADZE

Allelic Diversity Analyzer

Language:C++020

blue_af

Calculate BLUE allele frequencies

Language:Python000

dog_recomb

Data associated with Auton et al., PLOS Genetics, 2013

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dog_recombination

Supporting data for doi:10.1534/g3.116.034678: A Pedigree-Based Map of Recombination in the Domestic Dog Genome

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errlog

Basic log file and error file logging

Language:C++GPL-3.0020

gala2-ROH

Computational pipeline for GALA II project analyzing runs of homozygosity

Language:RMIT000

respect

A program for computing and plotting uni- and bi-variate MAF spectrums

Language:C++GPL-3.0000

ROHsims

Simulation code from Szpiech et al. (2019) AJHG In Press.

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Rxy-kin

Compute Rxy statistic for testing purging of alleles with related samples

Language:Python000