szhan

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University of Oxford

Oxford, United Kingdom

https://scholar.google.ca/citations?user=2nS6Z44AAAAJ&hl=en

Organizations

tskit-dev

Shing Hei Zhan's starred repositories

rustlings

:crab: Small exercises to get you used to reading and writing Rust code!

Language:RustMIT51696 320 628

The-Art-of-Linear-Algebra

Graphic notes on Gilbert Strang's "Linear Algebra for Everyone"

Language:PostScriptCC0-1.016684 141 14

pandas-ai

Chat with your database (SQL, CSV, pandas, polars, mongodb, noSQL, etc). PandasAI makes data analysis conversational using LLMs (GPT 3.5 / 4, Anthropic, VertexAI) and RAG.

Language:PythonNOASSERTION12233 102 643

numpy-100

100 numpy exercises (with solutions)

Language:PythonMIT11866 207 82

awesome-ai-residency

List of AI Residency Programs

rich-cli

Rich-cli is a command line toolbox for fancy output in the terminal

Language:PythonMIT2997 28 52

stat_rethinking_2023

Statistical Rethinking Course for Jan-Mar 2023

Language:RCC0-1.02173 150 15

positron

Positron, a next-generation data science IDE

Language:TypeScriptNOASSERTION2029 25 2326

Turing.jl

Bayesian inference with probabilistic programming.

Language:JuliaMIT2011 51 1059

rust-bio

This library provides implementations of many algorithms and data structures that are useful for bioinformatics. All provided implementations are rigorously tested via continuous integration.

Language:RustMIT1550 71 196

seqtk

Toolkit for processing sequences in FASTA/Q formats

Language:CMIT1357 62 171

foldseek

Foldseek enables fast and sensitive comparisons of large structure sets.

Language:CGPL-3.0724 19 288

OrthoFinder

Phylogenetic orthology inference for comparative genomics

Language:PythonGPL-3.0653 27 888

awesome-software-engineering

A curated list of awesome software engineering resources.

assembly-stats

Get assembly statistics from FASTA and FASTQ files

Language:C++NOASSERTION110 18 5

granges

A Rust library and command line tool for working with genomic ranges and their data.

Language:Rust91 3 8

lace

A probabalistic ML tool for science

Language:HTMLNOASSERTION90 5 25

AllTheBacteria

Follow up to Grace Blackwell's 661k dataset, for 2023

Language:PythonMIT68 19 24

fold_tree

snakemake pipeline for creating trees from sequence sets

Language:Jupyter NotebookMIT65 11 20

cpp-recipes

Source code for 'C++ Recipes' by Bruce Sutherland

Language:C++NOASSERTION25 80

SINGER

Sampling and inference of genealogies with recombination

Language:C++MIT20 4 18

3diphy

Maximum likelihood structural phylogenetics by including Foldseek 3Di characters. Supporting Information for Puente-Lelievre et al. 2023n for

Language:RGPL-3.016 2 1

AleRax

Gene tree - species tree reconciliation from gene tree distributions

Language:C++14 4 7

tskit_arg_visualizer

Interactive visualization method for ancestral recombination graphs

Language:JavaScriptMIT11 3 59

CherryML

Scalable Maximum Likelihood Estimation of Phylogenetic Models

Language:PythonBSD-3-Clause8 40

tstrait

Quantitative trait simulation for ARGs

Language:PythonMIT6 8 59

lshmm

code to run Li and Stephens

Language:PythonMIT3 3 21

adaptive-evolution

An atlas of continuous adaptive evolution in endemic human viruses

Language:Jupyter Notebook300

tsinfer-snakemake

A snakemake workflow for using tsinfer

Language:Python2 5 18

tsqc

Utilities for evaluating inferred tree sequences

Language:PythonMIT2 4 64