szalata

bonito

Bonito - A PyTorch Basecaller for Oxford Nanopore Reads

Contact-Pro

Contact Pro

cpp_progress_bar

C++ progress bar for console applications

fairseq

Facebook AI Research Sequence-to-Sequence Toolkit written in Python.

genomics_project

joint_sc_embedding

ntds-genetic-malaria-susceptibility

mice genetics

Shape-of-Minima-of-Deep-Learning-Architectures-for-Sequence-Modelling

KoSpeech

Open-Source Toolkit for End-to-End Korean Automatic Speech Recognition.

LaplaceAE

Laplacian_Autoencoder

Laplace Approximation for Bayesian AutoEncoder Training adapting for single-cell transcriptomics

lasr

PyTorch Lightning implementation of Automatic Speech Recognition

loss-landscapes

Approximating neural network loss landscapes in low-dimensional parameter subspaces for PyTorch

luke

LUKE -- Language Understanding with Knowledge-based Embeddings

MolCLR

Implementation of MolCLR: "Molecular Contrastive Learning of Representations via Graph Neural Networks" in PyG.

MultiMAP_rbsl

MultiMAP eval

neural_organoid_atlas

Reproducibility repository for the Human Neural Organoid Atlas publication

PyHessian

PyHessian is a Pytorch library for second-order based analysis and training of Neural Networks

scgen_vae

scvi-tools

semantic_neighborhoods

Preserving Semantic Neighborhoods for Robust Cross-modal Retrieval [ECCV 2020]

tailfindr

An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.

transform-and-tell

Code for Transform and Tell paper in CVPR 2020.