sylvainschmitt

SSDM

Stacked Species Distribution Modelling R package

sdmverse

sdmverse is a collaborative metapackage for listing all the metadata of the Species Distribution Modelling (SDM) packages. sdmverse includes a graphical interface available locally or online (see below). sdmverse integrates metadata from SDM packages and checks their validity against the CRAN metadata for perenity.

rcontroll

Package for individual-based forest growth simulator TROLL

treegrowth

Variation in the growth potential of individual trees at the Paracou research station

website

My personal webpage

DownClim

Snakemake and Singularity workflow to Downscale Climate Projections

genomeAnnotation

singularity & snakemake workflow to annotate genomes.

getCordex

Get projection data from CORDEX

microclim

microclim is a sub-project of the first article from Vincyan Badouard's PhD

singularity-r-bioinfo

R and bioinformatic packages Singularity container

treespeciesDescriptors

Repository to develop descriptors of the environment and performance of tropical tree species in Paracou for the Camille and Sebastien analyses.

detectMutations

singularity & snakemake workflow to detect mutations with several tools to detect mutations

hydroITV

Hydraulic trait inter- versus intra-specific local variability.

c4f_tree_allometry

getEra

Get climatic data from ERA5-Land on CDS using python cdsapi

handbook

This is a personal handbook test for all my activity as a researcher at CIRAD.

ideas

My participation into the IDEAS project. The aim is to build climate indices related to land use change in Guaviare.

inferGrowth

`singularity` & `snakemake workflow to infer growth from Guyafor data.

regeneration

singularity-cdsapi

Singularity image for Python API to access the Copernicus Climate Data Store (CDS)

singularity-LoggingLab

R and LoggingLab package

singularity-r-bayesian

R and bayesian packages Singularity container

singularity-troll

TROLL and associated R packages Singularity container

smkTemplate

singularity & snakemake workflow template.

sylvainschmitt

tarchetypes

Archetypes for targets and pipelines

treemutation

Mutation in the tropical tree canopy

treemutation_codes

All code for Schmitt, S., Heuret, P., Troispoux, V., Beraud, M., Cazal, J., Chancerel, É., ... & Tysklind, N. (2024). Low-frequency somatic mutations are heritable in tropical trees Dicorynia guianensis and Sextonia rubra. Proceedings of the National Academy of Sciences, 121(10), e2313312121.

troll_eval

Evaluation of TROLL model version 4

trollExp

singularity & snakemake workflow to run a TROLL experiment.