syjgino / SLA

A DMS Shotgun Lipidomics Workflow Application to Facilitate High-Throughput, Comprehensive Lipidomics

Shotgun Lipidomics Assistant

A python project to read and analysis Sciex Analyst output data
UCLA Lipidomics Core
View Demo | DataInspectGUI

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A DMS Shotgun Lipidomics Workflow Application to Facilitate High-Throughput, Comprehensive Lipidomics
Baolong Su, Lisa F. Bettcher, Wei-Yuan Hsieh, Daniel Hornburg, Mackenzie J. Pearson, Niek Blomberg, Martin Giera, Michael P. Snyder, Daniel Raftery, Steven J. Bensinger, and Kevin J. Williams
Journal of the American Society for Mass Spectrometry Article ASAP
DOI: 10.1021/jasms.1c00203

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Instruction

Please download the latest released package (version 1.3) and read the readme.docx
Note that the deployed executable file within the SLA may trigger some antivirus software. You can retore the file within your antivirus software if it is removed.

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Version Updates

• v1.3
  • Tune:
    • Add option to choose starting COV and ramp step size
  • ReadMzml:
    • Add option to choose max number of 0s allowed among 20 scans
    • Add option to choose total number of scans
    • Add capability to process a 3rd method
  • Merge:
    • Add capability to process a 3rd method
    • Allow user to select sheet used as sample map