Table Of Contents
- Machine Learning for Healthcare
- Companies
Machine Learning for Healthcare
This repository is a list of the all the relevant resources on applying machine learning to healthcare. If you see an article, repository, or other useful addition please make a pull request. At the moment structure of the repository is as follows: instead of being broken down by machine learning domains as you would technically expect (i.e. computer vision, NLP, audio...etc), it is broken down by application area (i.e. precision medicine, genomics, medical imaging/radiology, hospital operations...). Papers, conferences, tools, or courses that cover multiple areas of healthcare are moved to the "other/overlapping" category. If you think that this is confusing or there is a better way of doing things please post in the issues discussion
Introduction
Genomics
Machine Learning Genomic Medicine
Deep learning for Genomics as Overview
Precision Medicine/Drug Discovery
Deep generative models of genetic variation capture the effects of mutations
GAMENet: Graph Augmented MEmory Networks for Recommending Medication Combination
End-to-end training of deep probabilistic CCA for joint modeling of paired biomedical observations
Fréchet ChemNet Distance: A metric for generative models for molecules in drug discovery
Lesson Learned from Natural Language Inference in the Clinical Domain
Molecular De Novo design using Recurrent Neural Networks and Reinforcement Learning Code
NAACL Paper on Cross Speciality Entity Recognition for Medicine
Natural Language Processing for Precision Medicine ACL 2017 Tutorial.
Regression tree methods for precision medicine talk by Wei-Yin Loh University of Wisconsin-Madison, USA.
Survey of Computational Methods for Drug Discovery
Tools
Medical Imaging
Papers
A Two-Stream Mutual Attention Network for Semi-supervised Biomedical Segmentation with Noisy Labels
Clinically Applicable deep learning for retinal disease diagnosis and referal
CheXNet: Radiologist-Level Pneumonia Detection on Chest X-Rays with Deep Learning
Dermatologist Level Skin Classification of skin cancer with deep neural networks
Overview of Deep Learning in Medical Imaging
On the Automatic Generation of Medical Imaging Reports
OBELISK - One Kernel to Solve Nearly Everything: Unified 3D Binary Convolutions for Image Analysis
Hybrid Retrieval-Generation Reinforced Agent for Medical Image Report Generation
Towards Deep Cellular Phenotyping in Placental Histology
Blogs, blog posts, and reddit discussions
A case study of text annotation for medical imaging - LightTag
Conferences and Workshops
Deep learning for healthcare video series MIT
Harvard Digital Doctor Symposium
Medical Imaging with deep learning MIDL
Medical Imaging Summer School 2014
Medical Image Computing and Computer Assisted Intervention
Machine Learning in Medical Imaging
SIM Conference on Machine Intelligence in Medical Imaging
CVPR 2018 Medical Imaging Workshop
Research Groups
Images Science Institute at Utrecht
Competitions
Digital Mammography Recall Challenge
Kaggle 2017 Data Science Bowl-Lung diagnosis
NIPS 2018 Prothestics Challenge
LUNA 16
Kaggle 2016 Data Science Bowl-Measuring ejection fraction
Videos
Learning to read deep learning papers -i.e. dicussion of ChexNet by Stanford
Datasets
Code Repositories
Tools
Other
Medical Image Analysis Network (UK)
Hospital Operations (i.e. OR Utilization, Scheduling, Discharge planning, HAIs...)
Detecting Hospital Acquired Infections with SVMs
Emergency Department Online Patient-Caregiver Scheduling
Few-Shot and Zero-Shot Multi-Label Learning for Structured Label Spaces (focuses on ICD Coding)
Learning to predict post-hospitalization VTE risk from EHR data
Multitask Learning and Benchmarking with Clinical Time Series Data
Smart Hospital Hand Hygiene (Stanford)
Unsupervised Domain Adaptation for Clinical Negation Detection
Vision Based Prediction of ICU Mobility with RNNs
Signal processing, forecasting, and adverse event prediction
Papers
Analysing and Improving the Diagnosis of Ischaemic Heart Disease with Machine Learning NIH Article
Doctor AI: Predicting Clinical Events via Recurrent Neural Networks published in MLR
Cardiologist level classification of arrhythmia (Stanford)
Dynamic Bayesian Flu Forecasting
Deep Self Organization with application to ICU
Forecasting Treatment Responses Over Time Using Recurrent Marginal Structural Networks
Other and Multiple Categories
Datasets
Clinical Case Reports Dataset for machine comprehension
EBM-NLP 5,000 richly annotated abstracts of medical articles
EMR-Question and Answering Code
Conferences
Machine Learning for Healthcare Conference
Trec Clinical Decision Support
Machine Learning for Healthcare 2018
2017 ICML Healthcare Related Talks
Ninth Workshop on Health Text Mining at EMNLP
Papers
Adversarial Attacks Against Medical Deep Learning Systems
Annotating a Large Representative Corpus of Clinical Notes for Parts of Speech
Automated Medical Scribe for recording clinical encounters
Deep Learning for Healthcare Review, Opportunities, Challenges published Oxford Academic.
EMER-QA A large corpus for question answering on electronic medical records
GAMENet: Graph Augmented MEmory Networks for Recommending Medication Combination
Leveraging uncertainty information from deep neural networks for disease detection
Label-aware Double Transfer Learning for Cross-Specialty Medical Named Entity Recognition
Machine Learning for Medical Diagnosis PSU article 2006
MiME: Multilevel Medical Embedding of Electronic Health Records for Predictive Healthcare
Novel Exploration Techniques (NETs) for Malaria Policy Interventions
Uncertainty-Aware Attention for Reliable Interpretation and Prediction
Additional Natural Language Processing for Healthcare Tools
Clinical Named Entity Recognition system (CliNER)
Clinical Text Analysis Knowledge Extraction System (cTAKES)
Courses
Machine Learning for Medicine MIT Course
Companies
Companies are arranged alphabetical order.
