Sven F.'s repositories
simple-httpserver-cli
A super simple jetty HTTP server with Spark framework, that just prints incoming HTTP POST requests.
cookiecutter
Template for your own top-end Nextflow pipeline, customised using Cookiecutter
concurrency-exercises
Some exercises to learn how to do concurrent programming with Java.
configs
Config files used to define parameters specific to compute environments at different Institutions.
effective-java
Exercises to Bloch's Effective Java Items
etl-scripts
openbis etl scripts
gitflow-example
An example project to display the Gitflow workflow.
github-pages-playground
Experimenting with Github pages and integrations
ICGC-featureCounts
WIP: A Nextflow pipeline to run featureCounts on RNAseq BAM files on ICGC in AWS/AWS Batch
kotlin-playground
Exploration of Kotlin programming language
logos
contains logos for nf-core
nf-core.github.io
Documentation website for the nf-core community
nf-registry-microservice
A microservice consuming JSON objects emitted by Nextflows weblog feature and puts it into a DB.
NGI-RNAseq
Nextflow RNA-Seq Best Practice analysis pipeline, used at the SciLifeLab National Genomics Infrastructure.
presentations
NIH BYOB Presentation Materials
simple-server-api
A simple Spark web-server, that can be used for API development
slack-invite-automation
A tiny web application to invite a user into your slack team.
socketio-playground
A socket.io playground repository.
template-playground
Test repo for nf-core robot
tools
Python package with helper tools for the nf-core community.
workflow-setup-wizard
Consumes a Nextflow workflow parameter metadata JSON and provides a model to query these.