Analysis of transposable elements using dnaPipeTE
#!/bin/bash
#SBATCH -J dnapipemoa7 # Job name #SBATCH -o dnapipemoa7.%A.out # File to which stdout will be written #SBATCH -n 16 #SBATCH -p edwards #SBATCH --mem-per-cpu 20000 # Memory for all cores in Mbytes (--mem-per-cpu for MPI jobs) #SBATCH --time=0-23:00:00 #SBATCH --mail-type=ALL #SBATCH --mail-user=sedwards@fas.harvard.edu
module load gcc/7.1.0-fasrc01 R/3.5.1-fasrc02 module load python/3.6.3-fasrc02 module load bowtie2/2.3.2-fasrc02 module load jellyfish/2.2.5-fasrc01
python3 /n/home06/sedwards/moa/dnaPipeTE/dnaPipeTE.py -input /n/holylfs/LABS/edwards_lab/sedwards/moa/mapping/mapped/bowtie2_L_aligned.gz -output /n/holylfs/LABS/edwards_lab/sedwar$