Sutanu Bhattacharya's repositories
about_writing
some generic (but hopefully still useful) recommendations on writing your thesis
contact-vis
Python package for simple protein residue-residue contact map plotting.
Contact_prediction_scripts
Scripts for contact prediction
CVW_PyHP
Supplementary material for Cornell CVW on "Python for High Performance"
Data-Science--Cheat-Sheet
Cheat Sheets
DeepDom
DeepDom is an ab-initio method for protein domain boundary prediction
DeepMetaPSICOV
Deep ResNet-based protein contact prediction
deepmind-research
This repository contains implementations and illustrative code to accompany DeepMind publications
dynamic_programming
This is the code for "Dynamic Programming" by Siraj Raval on Youtube
EVcouplings
Evolutionary couplings from protein and RNA sequence alignments
exmachina
Sequence aligner for accurate template-based protein structure prediction
GREMLIN_CPP
GREMLIN - learn MRF/potts model from input multiple sequence alignment! Implementation now available in C++ and Tensorflow/Python!
learning-bioinformatics-at-home
resources for learning bioinformatics
matplotlib-tutorial
Matplotlib tutorial for beginner
ML-From-Scratch
Machine Learning From Scratch. Bare bones NumPy implementations of machine learning models and algorithms with a focus on accessibility. Aims to cover everything from data mining to deep learning.
multicom
The MULTICOM protein structure system. This repository include the source code and documents of both template-based and template-free modeling of the MULTICOM protein structure prediction system. 1D feature prediction, contact prediction, and clustering-based model ranking programs are also included.
PconsC4
Fast and easy contact prediction.
pdbtools
A set of tools for manipulating and doing calculations on wwPDB macromolecule structure files
Programming_Interview_Study_Plan
This is the Programming Interview Study Plan by Siraj Raval on Youtube
prospr
ProSPr: Protein Structure Prediction
RaptorX-Contact
Deep residual neural network for protein contact/distance prediction developed by Xu group
seaborn
Statistical data visualization using matplotlib