sutanubh1

esm

Evolutionary Scale Modeling (esm): Pretrained language models for proteins

3D_from_DMS_Extended_Data

about_writing

some generic (but hopefully still useful) recommendations on writing your thesis

compBiology

contact-vis

Python package for simple protein residue-residue contact map plotting.

Contact_prediction_scripts

Scripts for contact prediction

CVW_PyHP

Supplementary material for Cornell CVW on "Python for High Performance"

Data-Science--Cheat-Sheet

Cheat Sheets

DeepDom

DeepDom is an ab-initio method for protein domain boundary prediction

DeepMetaPSICOV

Deep ResNet-based protein contact prediction

deepmind-research

This repository contains implementations and illustrative code to accompany DeepMind publications

dynamic_programming

This is the code for "Dynamic Programming" by Siraj Raval on Youtube

EVcouplings

Evolutionary couplings from protein and RNA sequence alignments

exmachina

Sequence aligner for accurate template-based protein structure prediction

GREMLIN_CPP

GREMLIN - learn MRF/potts model from input multiple sequence alignment! Implementation now available in C++ and Tensorflow/Python!

home

learning-bioinformatics-at-home

resources for learning bioinformatics

matplotlib-tutorial

Matplotlib tutorial for beginner

mfDCA

ML-From-Scratch

Machine Learning From Scratch. Bare bones NumPy implementations of machine learning models and algorithms with a focus on accessibility. Aims to cover everything from data mining to deep learning.

multicom

The MULTICOM protein structure system. This repository include the source code and documents of both template-based and template-free modeling of the MULTICOM protein structure prediction system. 1D feature prediction, contact prediction, and clustering-based model ranking programs are also included.

PconsC4

Fast and easy contact prediction.

pdbtools

A set of tools for manipulating and doing calculations on wwPDB macromolecule structure files

Programming_Interview_Study_Plan

This is the Programming Interview Study Plan by Siraj Raval on Youtube

prospr

ProSPr: Protein Structure Prediction

prosstt-scripts

python_training

RaptorX-Contact

Deep residual neural network for protein contact/distance prediction developed by Xu group

seaborn

Statistical data visualization using matplotlib

sutanubh1.github.io