Susheel Bhanu Busi's repositories
learn-genomics-in-unix
An interactive course on learning genomics/bioinformatics tasks in Linux.
ceh_moleco
lab_guidelines_repo
mice_multiomics_mmrrc
metaG_metaT analyses for two gut microbiota profiles established by Ericsson et al. at the Mutant Mouse Resource and Research Center at the University of Missouri-Columbia (USA)
Scripts
Collection of various scripts
snakemake-tutorial
Tutorial to getting started with the Snakemake workflow manager
bcbb
Incubator for useful bioinformatics code, primarily in Python and R
FlashWeave.jl
Inference of microbial interaction networks from large-scale heterogeneous abundance data
genome-bin-tools
Interactive tools for metagenome visualization and binning in R
hmm_updater
Automated HMM creation with Uniprot sequences using Rhea or EC as clustering IDs
METABOLIC
A scalable high-throughput metabolic and biogeochemical functional trait profiler
microbiome-analysis
CODA microbiome-analysis using aldex2, pylofactorisation
networktutorials
Repository for presentations and network inference tutorials
Planets_SoftwareCarpentry
Mars project exercise
QIIME2_PICRUSt_batch
Batch script for running Qiime2 all the way through to making a file for PICRUSt. Additional files for PICRUSt will be added later
roary2fripan
Formats Roary output for viewing in FriPan
skills-introduction-to-github
My clone repository
snakemake-workflow-gsea
A Snakemake Workflow for Gene Set Enrichment Analysis
sra_read_downloader
A handy script for downloading reads from any kind of accession from the SRA.
viralMetagenomicsPipeline
Pipeline for metagenomic community analysis using DNA isolated from virus-like particles