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Survival Analysis Group LUMC (survival-lumc)

Survival Analysis Group LUMC

survival-lumc

Geek Repo

A Github site for projects from the Survival Analysis Group at Leiden University Medical Center (LUMC, the Netherlands).

Home Page:https://www.lumc.nl/en/afdelingen/biomedical-data-sciences/med-stat/survival-analysis/

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Survival Analysis Group LUMC's repositories

ValidationCompRisks

Code repository for the manuscript 'Validation of the performance of competing risks prediction models: a guide through modern methods' (published in BMJ)

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FrailtyTutorial

R-code and output of all analyses in Balan & Putter (2020): A tutorial in frailty models, Statistical Methods in Medical Research, vol. 29(11), 3424-3454, https://journals.sagepub.com/doi/full/10.1177/0962280220921889.

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Landmarking2.0

Code for the paper "Landmarking 2.0: Bridging the gap between joint models and landmarking" by Hein Putter & Hans van Houwelingen

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FG-TotalFailureProbability

Code and results of Section 4 of the paper "Fine-Gray subdistribution hazard models to simultaneously estimate the absolute risk of different event types: cumulative total failure probability may exceed 1", by Peter Austin, Ewout Steyerberg & Hein Putter

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Validation_Under_Interventions

Performance evaluation of predictions under interventions using longitudinal observational data

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CovidPredictimands

Code repository for the paper "The disconnect between development and intended use of clinical prediction models for Covid-19: a systematic review and real-world data illustration"

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DynamicPrediction-book

Code and datasets used in book "Dynamic Prediction in Clinical Survival Analysis" by Hans van Houwelingen and Hein Putter (2011)

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CauseSpecCovarMI

Code and supplementary materials for the manuscript "Multiple imputation for cause-specific Cox models: assessing methods for estimation and prediction" (2022, Statistical Methods in Medical Research)

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ImmuneReconstJM

Code and supplementary materials for the manuscript "Joint models quantify associations between T-cell kinetics and allo-immunological events after allogeneic stem cell transplantation and subsequent donor lymphocyte infusion" (2023, Frontiers in Immunology)

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ReviewHaemaMissing

Code and supplementary materials for the manuscript "Handling missing covariate data in clinical studies in haematology" (2023, Best Practice & Research Clinical Haematology)

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AdjCuminc

Performing covariate adjustment on cumulative incidence curves for competing risks data, and comparing various approaches to covariate adjustment via simulation.

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Benchmarking

Benchmarking survival outcomes: A funnel plot for survival data

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FineGrayCovarMI

Code repository for the manuscript 'Multiple imputation of missing covariates when using the Fine–Gray model' (submitted)

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FineGrayDGM

Code accompanying the manuscript "Why you should avoid using multiple Fine–Gray models: insights from (attempts at) simulating proportional subdistribution hazards data" (under review)

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AdvancedSurvival-course

Landing site for 2024 course "Advanced Survival Analysis", given in Leiden (the Netherlands).

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