supernifty

dovex

Data overview, visualization, and exploration for pre-analysis.

gustle

find exactly matching contigs in a genome

somatic_pipeline

Best practice somatic pipeline for the Colorectal Oncogenomics Group

cnv_caller

CNV caller for WES or panel data

coglabweb

Website for the Colorectal Oncogenomics Group

csvtools

merge csv files with different columns

LOHdeTerminator

mutational_signature

Calculate mutational signatures from a VCF file

papillon

measure coverage across regions and samples

purity

supernifty.github.io

animx

simple tools for adding animations to images

biotools

helpful bioinformatics scripts

enwrite

Manage writing a large body of work such as a thesis or book

genome

Website to quickly lookup common genomic information

gurita

A convenient and expressive tool for data analytics and plotting on the command line

kataegis

Assess kataegis and generate waterfall plots

mutational_signature_search

personal-website

Personal website

plotme

Easily generate some standard plots from tabular data in Python

quick_graph

A simple web-based grapher based on pasting data and plot.ly

quizme

A command-line question answer Python app

simple_ml

very simple ml with scikit-learn

slurm_util

Scripts for analysing slurm jobs

statx

Simple statistics calculations on the command line

taketwo_web

timelapse_mac

Take screenshots on your mac to make a timelapse

umi

Tools to analyse UMI (unique molecular index) data

website

Academic website

writing_util

helpers for writing