suny-downstate-medical-center / netpyne

A Python package to facilitate the development, parallel simulation, optimization and analysis of multiscale biological neuronal networks in NEURON.

http://www.netpyne.org

suny-downstate-medical-center/netpyne Issues

[other] Dependency on future
Closed 4 months ago5
Broken links on netpyne site
Updated 4 months ago
Unable to load simulation output .pkl file
Closed 4 months ago2
Conceal 'private' methods from documentation
Updated 4 months ago
LFP recording error when pop has multiple cell morphologies
Updated 4 months ago
Correct dimension for basket cell & OLM in CA3 example?
Closed 4 months ago4
'CompartCell' object has no attribute 'hPointp'
Updated 4 months ago1
[other] netpyne.org: "Read the docs" link in the middle returns to page -> linked back to netpyne.org
Closed 5 months ago2
[other] load_file return value is not considered
Closed 6 months ago1
Handle mod files load through netpyne api method
Closed 6 months ago2
[documentation] Add some information on running netpyne with MPI
Updated 7 months ago
Create a "netpyne" command to run models using the new format i.e. > netpyne index.npjson
Updated 8 months ago1
Izhikevich point neuron as ARTIFICIAL_CELL in NEURON/NetPyNE
Updated 9 months ago10
Batch experiment reacts strangely when 0 is used for population number of cell
Closed 9 months ago4
NetPyNe with Optuna batch - mpiexec not starting nrniv [Bug report]
Updated 10 months ago2
[bug] Not all netpyne submodules respect the `netpyne.__gui__` variable, making netpyne currently unusable on hpcs
Closed 10 months ago3
[Bug report] Coreneuron: Assertion `nc->target_ == pnt' failed
Closed a year ago2
NetPyNE and fMRI/DTI data
Closed a year ago1
plotRateSpectrogram
Closed a year ago1
netpyne run failure with a neuron 7.7
Closed a year ago3
[Bug report] Using a plasticity mechamism (STDP) with CoreNEURON
Closed a year ago2
NetPyNE should infer regions from RxD Rates like NEURON
Closed a year ago
How to get same plot format as with previous plotRaster?
Closed a year ago1
Caching the simulation results
Closed a year ago
Remove matplotlib version requirements after next matplotlib update
Closed a year ago2
[documentation] "Advanced features" page returns 404
Closed a year ago1
sim.analysis.plotratePSD() doesn't work with populations
Closed a year ago3
Add documentation for the complex stimulation (extend connParams, stimSourceParams, stimTargetParams)
Closed a year ago4
Specifying dependencies in the install_requires
Updated a year ago1
Creating network for M1Detailed fails
Closed a year ago1
Issue with batch simulation on Windows
Closed 2 years ago3
[Bug report] asd_parallel and optuna not working on Windows for batch simulations
Closed 2 years ago2
Support for setting synMechParams parameters from random distributions
Closed 2 years ago1
NetPyNE v1.0.3 produces different network structure for same seed
Closed 2 years ago3
Feature for 2D Plotting: ability for user to specify line color
Updated 2 years ago1
Issue with batch and mpi4py
Closed 2 years ago1
Operation netpyne on Neuron with CoreNeuron and GPU
Updated 2 years ago2
Fraction approximations for diversity
Closed 2 years ago1
plotSpikeStats() function is missing
Closed 2 years ago1
Extend model specification to include references to external neuroscience ontology
Updated 2 years ago
[New feature] Extending the 'preConds' and 'postConds' parameters in netParams.connParams to accept string-based functions
Updated 2 years ago
Single quotes in batch command to run job
Closed 2 years ago
[Bug report] test failures on s390x/i686/aarch64/ppc64le
Updated 2 years ago
[documentation] Activating the coreNeuron package in a NetPyNE example
Closed 3 years ago22
LFP units
Closed 3 years ago
Allow generic stimulations to be specified with stimSourceParams
Closed 3 years ago1
popRates should be renamed to popInfo
Updated 3 years ago1
[Bug report]
Closed 3 years ago1
What are the available keys in the dictionary of ions?
Closed 3 years ago1
Make netpyne less verbose
Updated 3 years ago