sunqiangzai's repositories
FusionScan
a fast and accurate prediction tool for fusion genes from RNA-seq data
Language:Python000
medCrawl
Simple Python crawler for PubMed
Language:Python000
Language:R000
genstats
Statistics course for JHU Genomic Data Science Sequence
Language:HTMLNOASSERTION000
mirna
microRNA profiling pipeline
Language:Perl000
Shiny-Power-Calculator
Basic Interactive Power Calculator in Shiny
Language:R000
circos-data-visualization-how-to-code
Code examples used in "Circos Data Visualization How-To"
000
DevDataPdt
Repo for Coursera Developing Data Products course
Language:R000
pfam-get-hmm
To download HMM models from Pfam
Language:Python000
rna-seq-diff-exprn
RNA-Sequencing data differential expression analysis pipeline. Performs: genome coverage (via bedtools and HTSeq), generates Circos code and plots, differential expression (via DESeq and NOISeq), structural variant detection (e.g. fusion genes, via SVDetect) and differential exon usage (via DEXSeq).
Language:R000