Kevin's repositories
100-Days-Of-ML-Code
100 Days of ML Coding
assemble_pipeline
Assemble and following pipeline used in wisent genome paper.
assembling-complete-mt-genome
This repository contains tools for an automated assembly of the complete mitochondrial DNA from Illumina NGS data
awesome-pipeline
A curated list of awesome pipeline toolkits inspired by Awesome Sysadmin
Bayesian-Computation-with-R
Answers and notes for the book Bayesian Computation with R by Jim Albert
biol525D
Course material for UBC Biol525D
chopper
chopper -- an R package to manipulate DNA alignments and data preparation for phylogenetic analyses
circosplots
Scripts to generate circos plots
evol2019
Code for analyses presented at Evolution 2019
Geostat2018
Material for the course on machine-learning based environmental monitoring at geostat 2018
goettingen_2019
mixed models course, Goettingen
NanoPlot
Plotting scripts for long read sequencing data
ncbi_blast_tutorial
Short introduction to command line NCBI blast tools
nextflow-demos
Example Nextflow pipelines and programming techniques
perl
Perl scripts
python
Python scripts
python_course_material
Material for a four day course to teach Python programming and associated data analysis tools.
RNAseq
RNA-Seq processing pipeline
SequencEnG
An interactive learning resource for next-generation sequencing (NGS) techniques
stat4c03
generalized linear models
Statistical-Rethinking-with-Python-and-PyMC3
Python/PyMC3 port of the examples in " Statistical Rethinking A Bayesian Course with Examples in R and Stan" by Richard McElreath
Transcriptome-Assembly-Statistics
Some scripts providing assembly statistics
VaCaPi
GATK guideline based Varient calling pipeline