sunnyEV / rnaseq-in-the-cloud

RNA-Seq in the Cloud

June 21 & 23, 2021

CFDE Workshop

Open access

Requires github login

Adapted for CFDE workshop from materials developed by Taylor Reiter and N. Tessa Pierce for 2020-ggg-201b course at UC Davis.

To run snakemake in binder --

1. start the binder

2. at the command line, run

snakemake -j 4 --use-conda

3. open rnaseq-workflow.Rmd

4. knit to HTML