sunjh22

FastQ-Screen

Detecting contamination in NGS data and multi-species analysis

svim

Structural Variant Identification Method using Long Reads

Sniffles

Structural variation caller using third generation sequencing

pbsv

pbsv - PacBio structural variant (SV) calling and analysis tools

Benchmark-of-RNA-Editing-Detection-Tools

Benchmark analysis of RNA editing detection tools

REViewer

A tool for visualizing alignments of reads in regions containing tandem repeats

RepeatCatalogs

ExpansionHunter

A tool for estimating repeat sizes

AutoDock-Vina

AutoDock Vina

EquiScore

karyoploteR

karyoploteR - An R/Bioconductor package to plot arbitrary data along the genome

AtacWorks

Deep learning based processing of Atac-seq data

genomic-data-visualization-2024

Course website for Genomic Data Visualization 2024

figeno

Tool for plotting sequencing data along genomic coordinates.

minipileup

Simple pileup-based variant caller

SurVIndel2

A deletion and duplication caller from NGS paired-end data.

sccomp

Testing differences in cell type proportions from single-cell data.

GPTCelltype

immunotherapy_scRNAseq_papers

fetchngs

Pipeline to fetch metadata and raw FastQ files from public databases

awesome-chatgpt-prompts-zh

ChatGPT 中文调教指南。各种场景使用指南。学习怎么让它听你的话。

awesome-chatgpt-prompts

This repo includes ChatGPT prompt curation to use ChatGPT better.

coverageMaster

SURVIVOR

Toolset for SV simulation, comparison and filtering

open-interpreter

A natural language interface for computers

SnapATAC2

Single-cell epigenomics analysis tools

GeminiProChat

Minimal web UI for GeminiPro.

gpt4all

GPT4All: Chat with Local LLMs on Any Device

deepTools

Tools to process and analyze deep sequencing data.

ichorCNA

Estimating tumor fraction in cell-free DNA from ultra-low-pass whole genome sequencing.