sukritsingh

whisper

Robust Speech Recognition via Large-Scale Weak Supervision

city-roads

Visualization of all roads within any city

d3-cloud

Create word clouds in JavaScript.

opennn

OpenNN - Open Neural Networks Library

MolecularNodes

Toolbox for molecular animations in Blender, powered by Geometry Nodes.

3Dmol.js

WebGL accelerated JavaScript molecular graphics library

RoseTTAFold-All-Atom

mdtraj

An open library for the analysis of molecular dynamics trajectories

torchmd

End-To-End Molecular Dynamics (MD) Engine using PyTorch

alphamissense

jug

Parallel programming with Python

AutoDock-GPU

AutoDock for GPUs and other accelerators

rf_diffusion_all_atom

Public RFDiffusionAA repo

protein_generator

Joint sequence and structure generation with RoseTTAFold sequence space diffusion

DynamicBind

repo for DynamicBind: Predicting ligand-specific protein-ligand complex structure with a deep equivariant generative model

Fragmenstein

Merging, linking and placing compounds by stitching bound compounds together like a reanimated corpse

timemachine

Differentiate all the things!

wepy

Weighted Ensemble simulation framework in Python

msmbuilder2022

Statistical models for biomolecular dynamics

asapdiscovery

Toolkit for open antiviral drug discovery by the ASAP Discovery Consortium

secstructartist

A python module to plot secondary structure schemes

openmm-hip

assaytools

Modeling and Bayesian analysis of fluorescence and absorbance assays.

AFEXplorer

GraphVampNet

pdbwords

Printing text using protein structures

Kincore-standalone2

Kincore-Standalone2 - Python3 code for calculating the conformational state of typical protein kinases

PopShift

fluorescence_assay_working_data

sams_dunbrack

This is a toolkit to estimate free energy differences between different Dunbrack clusters of kinase conformations using self-adjusted mixture sampling (SAMS).