Suffi Azizan's repositories
viralrecon-nextflow-results
Result files generated by nf-core viralrecon pipeline on Nextflow for MOOC FutureLearn
sufyazi.github.io
Personal website repo.
CRM-fusion-neoantigen-nf
Repository documenting the modularization of fusion transcript neoantigen identification workflow into a Nextflow pipeline
cs50-playground
Personal playground repo of my progress while following HarvardX CS50 course.
curated-ref-TF-motifs
Repo backup
ENCODE-atac-pipeline-custom
Custom scripts for pre-processing and post-processing data files for ENCODE ATAC-seq pipeline. This repo is tied to an undisclosed research project so many scripts are not usable outside of the project-specific and architectural context they are written for.
fps-var-integration
Notebooks documenting the analyses done to integrate TF footprinting data from TOBIAS and variant data called from the ATAC-seq and DNAse-seq peaks.
ggseqlogo
Publication-quality sequence logos in R
qsmooth-norm-workflow
Repository detailing Rscript used to run a normalization strategy on a computing cluster via containerization.
tfbs-variant-calling-nf
Repository detailing a Nextflow pipeline to run mpileup variant callling on TF footprints.
TOBIAS-footprinting-custom
Mirrored repository to record my work on using TOBIAS to process and analyze data from an unpublished research project at work.
trinityrnaseq
Trinity RNA-Seq de novo transcriptome assembly
ultimate_rust_crash_course
Rust Programming Fundamentals - one course to rule them all, one course to find them...
variant-calling-analysis
Repository to mirror work repo where I store scripts and notebooks pertaining to variant calling pipeline (Samtools mpileup) output data integration with footprinting data.