Sudhanshu Shekhar's repositories
awesome-alternative-splicing
Alternative splicing resource
Awesome-Bioinformatics
A curated list of awesome Bioinformatics libraries and software.
applied-computational-genomics
Applied Computational Genomics Course at UU: Spring 2020
CF_Epigenetics
R code repository for statistical analysis and data visualization of manuscript "Genome-wide DNA methylation profiling shows a distinct epigenetic signature associated with Lung Macrophages in cystic fibrosis"
CirComPara
:microscope: A multi-method comparative bioinformatics pipeline to detect and study circRNAs from RNA-seq data
EWAS-fusion
Epigenomewide Association Studies (EWAS) with FUnctional Summary-based ImputatiON (FUSION)
focus
FOCUS: Fine-mapping Of CaUsal gene Sets
fusion_twas
methods for functional summary-based imputation
iab2
An Introduction to Applied Bioinformatics, 2nd Edition
imageCCA
Code for preparing and running the imageCCA method.
ldsc
LD Score Regression (LDSC)
MetaXcan
MetaXcan software and manuscript
METRO
Multi-ancEstry TRanscriptOme-wide analysis
Neurohacking
Neurohacking Coursera Course
Predicting-TWAS-features
Tool for predicting TWAS features (e.g. gene expression) in a target sample
PrediXcan
PrediXcan Project
sCCA-ACAT_TWAS
Repository for the code to conduct sCCA+ACAT multi-tissue TWAS approach
tensorflow
An Open Source Machine Learning Framework for Everyone
UTMOST
UTMOST (unified test for molecular signatures) is a method for cross-tissue gene expression imputation for transcriptome-wide association analyses.