stranda

rmetasim

rmetasim population genetic simulation engine

adjustPhenotypes

R package to adjust unpak phenotypes based on phytometers. Imported by multiple packages.

holoSimCell

linked forward/reverse time simulations for TIMBER project; this code is based on a cells rather than arbitrary locations

TimberWS1

TIMBER workshop at the IBS Meetings in Quito

unpakathon

general package containing unpak data in R binary data files, utility functions, and vignettes

aesExams

arabpaper1

Revisions for resub at JEB. This is the data and code for the first unpak (pilot data) project

biosize

cvmfs-singularity-sync

Scripts to synchronize Singularity images to a CVMFS repository.

demux

shell scripts and R support files to demultiplex barcodes in illumina data

demux2

demultiplex paired end illumina sequence. based on adapteramaIII barcoding scheme

enmSdm

Faster, better, smarter ecological niche modeling and species distribution modeling

fineRADstructure

A package for population structure inference from RAD-seq data

gstudio

An R package for the spatial analysis of population genetic data.

holoSim

R scripts for coupling spatially explicit forward simulations with coalescent simulations

holoSim.old

simulation of holocene recolonization processes

kernelPop2

msPac

rcpp integration of ms

pg-pollen

Polya-Gamma stick-breaking model to estimate pollen relative abundances.

pgR

R package for Bayesian Polya-gamma regression

pinus

scripts used to analyze data from stono root experiment

quantsel

rCamera

interface between gphoto and R using shiny

shinymarker

uses shiny to interact with ABI-produced electropherograms

stranda.github.io

stranda github pages

strataG

strataG is a toolkit for haploid sequence and multilocus genetic data summaries, and analyses of population structure.

testInvPath

setup tests of invasion pathways for C. gigas co-invaders

unpak-shiny

shiny apps for unpak database

unpakathonJan2016

data from unpak in R format plus some vignettes

unpakDB

R package that provides glue between unpakR and Rmysql. Could probably be subsumed into unpakR