stjude / ROSE

ROSE: RANK ORDERING OF SUPER-ENHANCERS

stjude/ROSE Issues

ModuleNotFoundError: No module named 'ROSE_utils'
Closed 19 days ago
Can I use this tool for plants?
Updated a month ago3
IndexError: list index out of range when applying the example data
Closed 3 years ago5
IndexError: list index out of range
Closed 2 years ago2
IndexError: list index out of range when using ROSE_geneMapper.py
Closed 2 years ago5
Find different
Updated 3 months ago
Error "OPERATION TIME OUT. MAPPING OUTPUT NOT DETECTED" when running python ROSE_main.py on mouse dataset
Closed 3 months ago
How to build a new genome?
Updated 4 months ago1
Why some regions have the same signal value in *12KB_STITCHED_TSS_DISTAL_ENHANCER_REGION_MAP.txt on my data?
Closed a year ago6
An error about module
Updated 9 months ago2
Cannot pull docker container
Closed 9 months ago
ROSE IndexError: list index out of range
Updated 10 months ago
ValueError: invalid literal for int() with base 10: '1e+05'
Updated 10 months ago3
Info on how refs in /annotation/ were created
Closed 2 years ago4
Difference between ROSE and ROSE2
Updated a year ago
Can ROSE be applied to process paired-end ChIP-seq data to identify super-enhancers?
Closed a year ago3
How to bulid ${genome}_refseq.ucsc files
Closed a year ago
UnboundLocalError: local variable 'startDict' referenced before assignment
Closed 2 years ago4
Is there any difference between "Stitched" and "Enhancers"
Closed 2 years ago2
invalid literal for int() with base 10
Closed 2 years ago1
Some refseq ID cannot be recognized
Closed 2 years ago2
Can we analyze multiple samples together to find consensus SE between them?
Closed 2 years ago1
SE calls with and without input-DNA bam file
Closed 2 years ago1
Got errors "X11 is not available" and "FileNotFoundError: [Errno 2] No such file or directory"
Closed 3 years ago1