Tamás Stirling's repositories
alphafold
Open source code for AlphaFold.
biomartr
Genomic Data Retrieval with R
docker-builds
:package: :whale: Dockerfiles and documentation on tools for public health bioinformatics
gbif-backbone-sql
GBIF Darwin Core taxonomic backbone to SQLite
ggplot2
An implementation of the Grammar of Graphics in R
hoardr
Manage cached files
isc-proposal
Boilerplate proposal for R Consortium ISC Proposals
kraken2
The second version of the Kraken taxonomic sequence classification system
mag
Assembly and binning of metagenomes
MetaDBparse
Parsing metabolomics databases with publically available resources
modules
Repository to host tool-specific module files for the Nextflow DSL2 community!
MulEA
MulEA - A Tool for Multi Enrichment Analysis
muleaData
muleaData is an ExperimentHubData Bioconductor package for the mulea R package
phylodeep
PhyloDeep is a python library for parameter estimation and model selection from phylogenetic trees, based on deep learning.
pruning_tree
Excluding too long branches from a phylogenetic tree
reproducibility-workshop
Materials for the Physalia course "Reproducibility in Bioinformatics" July 11-13, 2022
restez
:sleeping: :open_file_folder: Create and Query a Local Copy of GenBank in R
root_digger
A tool to root phylogenies
taxizedb
Tools for Working with Taxonomic SQL Databases
webchem
Chemical Information from the Web
webchem_paper
A paper describing the webchem package