stijnimaging / docker_dsri

Clone

git clone https://github.com/stijnimaging/docker_dsri.git
cd docker_dsri

Freesurfer

Build

cd freesurfer
docker build -t umdsri/freesurfer .

Run

From DockerHub vemonet/freesurfer:

docker run -it --rm --name freesurfer umdsri/freesurfer

Connect

To connect to a running freesurfer container using SSH:

docker exec -it freesurfer bash

Test

recon-all