stijnimaging

ExploreDTI_scripts

This repository holds several explanations of ExploreDTI scripts

UTAP_WP1

Processing UHF MRI :brain: data

Circos_brain

Visualize brain connections using Circos

journal_club

Fundamental Neuromodulation

3dprintyourbrain

How to 3D print your brain from a T1 MRI image.

ABIDE

ABIDE analyses

Deep_MRI_brain_extraction

3D convolutional neural network for MRI brain extraction

DICOM2BIDS

docker-fsl

FSL in Docker

docker-workshop

Docker Workshop

docker_dsri

freesurfer

Neuroimaging analysis and visualization suite

FSL-bash-scripts

For making FSL processing a bit easier.

histoannot

online histology annotation webapp

installDSRIpod_neuroimg

Install essential dependencies and neuroimaging softwares on Maastricht University DSRI cluster

magnitude

scripts for the fMRI magnitude manuscript

MDT

Microstructure Diffusion Toolbox

MID_task

Processing of E-Prime data from the MID task

Myelin-Validation-Systematic-Review

A companion resource to Lazari & Lipp, 2020

neurodocker

Generate custom Docker and Singularity images, and minimize existing containers

neuromarvl

Cloned from https://bitbucket.org/jimmux/neuromarvl

nipy

Neuroimaging in Python FMRI analysis package

presentations

r

Using R with Jupyter / RStudio on Binder

RHN

Regions for Health - WHO

ruby-ex

scrum-club

Software/Tools for Scientific Computing and Research @ UM Club

shape

stijnimaging.github.io

Github Pages template for academic personal websites, forked from mmistakes/minimal-mistakes

subcortical-auditory-atlas

Resources from our human subcortical auditory pathway mapping project