Stephen Kelly's starred repositories

aws-genomics-workflows

Genomics Workflows on AWS

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tools

Python package with helper tools for the nf-core community.

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nextflow-logger-service

Consumes Nextflow weblog payloads via Http REST and stores them in a database.

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django-celery-tutorial

Django Celery Tutorial

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Django-Celery-Example

This is a simple example about how to create a progress bar in Django with Celery.

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django-celery-example

Django sample app that uses celery to queue tweets for posting to twitter

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tmux-continuum

Continuous saving of tmux environment. Automatic restore when tmux is started. Automatic tmux start when computer is turned on.

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traffic_data

Uses Google Map's API in order to track traffic data from various start locations to various end locations for a period of time.

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flowcraft

FlowCraft: a component-based pipeline composer for omics analysis using Nextflow. :whale::package:

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dashing

A very dashing dashboard for slurm.

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slurm-gcp

Slurm on Google Cloud Platform

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celery

Distributed Task Queue (development branch)

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nginx-boilerplate

Awesome Nginx configuration template

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django-solo

Helps working with singletons - things like global settings that you want to edit from the admin site.

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djangocms-shiny-app

A Django app for adding R Shiny apps to a Django site with django CMS-specific features

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ubuntu-slurm

Steps to create a small slurm cluster with GPU enabled nodes

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mussolblog

Codes and other stuff used in my blog posts

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Flow

R-based genomics workflow management

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Slurm-web

Open source web dashboard for Slurm HPC clusters

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slurm-in-docker

Slurm in Docker - Exploring Slurm using CentOS 7 based Docker images

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BADAS_Nextflow_Tutorial

Nextflow tutorial for the BADAS series at NYU Center for Genomics and Systems Biology

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facets

Algorithm to implement Fraction and Copy number Estimate from Tumor/normal Sequencing.

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simple-file-upload

Example created for the blog post "How to Upload Files With Django"

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varsim

VarSim: A high-fidelity simulation validation framework for high-throughput genome sequencing with cancer applications

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docker-rstudio-server

Dockerfile for RStudio Server

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rocker-versioned

Run current & prior versions of R using docker

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sandman2

Automatically generate a RESTful API service for your legacy database. No code required!

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maftools

Summarize, Analyze and Visualize MAF files from TCGA or in-house studies.

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exiftool

ExifTool meta information reader/writer

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LNCPEP

A machine learning approach to detect micropeptides from noncoding RNAs

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