sterding / bam2x

extract information from bam (sequence alignment) files and generate tables for further analysis.

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bam2x

bam2x provide universal interface to query and read NGS and related data based on choromsome coordinates.

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Library Dependent: pysam twobitreader ( needed for query 2bit file) bxpython (optional, needed for query bigwig file) ghmm (optional for xbam2trans.py)

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extract information from bam (sequence alignment) files and generate tables for further analysis.

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