stephenslab / ebnm

R package to fit Empirical Bayes Normal Means model.

https://stephenslab.github.io/ebnm/

stephenslab/ebnm Issues

Pass optmethod directly to ashr for ash families; unhide optmethod = "REBayes"
Closed 3 months ago
Docs updates
Closed 3 months ago
throw warning when mode = 0 for ebnm_point_mass
Closed 3 months ago2
Fix descripition of intervals in baseball vignette.
Closed 3 months ago1
Adjust X axis in CDF plot
Updated 6 months ago1
add reference to Yusha's paper in ebnm_generalized_binary docs
Updated 8 months ago3
ebnm vignette needed
Closed 8 months ago1
document "ash" option for "prior_family" in ebnm() function
Closed 8 months ago
Weird error
Closed 9 months ago1
Colors in plot()
Closed a year ago7
Can we be more specific about the type of returned prior?
Closed a year ago
generalized binary incorrectly refuses to return lfsr
Closed a year ago
x = y line in plot() is hard to see
Closed a year ago2
Likelihood in summary?
Closed a year ago2
Make sure arguments in ... don't go nowhere
Closed a year ago1
wOBA is a tibble
Closed a year ago2
Undocumented argument in quantile.ebnm
Closed a year ago1
Implement cdf for laplacemix, gammamix
Closed a year ago1
propagate names in returned objects and methods
Closed a year ago
update examples to include some of the new methods
Closed a year ago
Add ability for plot method to compare results using different priors
Closed a year ago
Export and document init_g_for_npmle()
Closed a year ago
Add methods, accessor functions
Closed a year ago20
use function optimize when only one parameter is estimated
Updated a year ago1
Add ebnm_point_mass, improper uniform prior
Closed a year ago1
error with normal_scale_mixture when calling ebnm from python
Closed a year ago3
write up vignette
Closed 2 years ago2
implement plot.ebnm, summary.ebnm, print.summary.ebnm
Closed 2 years ago3
Add data to return object
Closed 2 years ago2
can deal with heteroskedastic errors for deconvolver
Updated 2 years ago1
correct lfsr for point_normal, point_laplace, etc
Closed 3 years ago1
something funny going on with llik in pi0 = 1 check
Closed 3 years ago2
update README
Closed 3 years ago1
ebnm_npmle can call ebnm_normal_scale_mix
Closed 3 years ago2
Do gradient check for parametric families
Updated 3 years ago
add point_cauchy prior family
Updated 3 years ago7
Recent update breaks flashr::flash call
Closed 3 years ago3
fix optmethod documentation
Closed 3 years ago1
default optmethods
Closed 3 years ago2
set optmethod defaults
Closed 3 years ago
add tests for very large and small data
Closed 3 years ago2
syntax with optmethod = "lbfgsb"
Closed 3 years ago
implement `ebnm_npmle`
Closed 3 years ago1
plan to produce uniform interface for more G choices
Closed 5 years ago5
error estimating mode in ebnm_point_normal
Closed 5 years ago
ebnm_scale_mix_normal (ebnm_ash)
Closed 5 years ago4
rename laplace functions point_laplace
Closed 5 years ago
global interface function
Closed 5 years ago
normal prior
Closed 5 years ago1
Don't rescale when g is fixed
Closed 6 years ago