stekaz

bcftools

This is the official development repository for BCFtools. To compile, the develop branch of htslib is needed: git clone --branch=develop git://github.com/samtools/htslib.git htslib

bioconda-recipes

Conda recipes for the bioconda channel.

biosketch

clinvar

This repo provides tools to convert ClinVar data into a tab-delimited flat file, and also provides that resulting tab-delimited flat file.

cutadapt

Cutadapt removes adapter sequences from sequencing reads

ensembl-variation

The Ensembl Variation Perl API and SQL schema

ensembl-vep

The Variant Effect Predictor predicts the functional effects of genomic variants

gtex-pipeline

GTEx Consortium data production and analysis pipelines

manta

Structural variant and indel caller for mapped sequencing data

nextflow

A DSL for data-driven computational pipelines

PROVEAN

SCVZC

VEP_plugins

Plugins for the Ensembl Variant Effect Predictor (VEP)