Stephanie Georges's repositories
bedtools2
bedtools - the swiss army knife for genome arithmetic
blt50
Analysis scripts for BLT50 RUFUS post-processing
BMI6060_examples
Quarto examples from BMI6060
COLO829_analysis
Quarto notebook for visualizing COLO829 intersections
RUFUS
RUFUS k-mer based genomic variant detection
gearpacker
code for gear packer website
gtenricher
multi-sample vcf filter for genotype enrichment
HCC1395_analysis
Quarto notebook for visualizing HCC1395 performance and intersections
helper_scripts
Bash helper scripts used on CHPC - mostly related to rufus stuff
helpers
Work helpers
PanelAppGE
Command line tool to nicely print Genomics England panel app results
poke-ref
A companion reference for Pokemon Go!
referee
RUFUS rewrite
rubybrown
Final project repository for ECE/CS 6780
sankey-af-viz
Vue component for genomic pileup visualization. Built on igv.js
ToyBrowser
Toy browser for CS6968
vcfstatsalive
A utility that calculates statistics off a vcf stream, reporting at a given interval in json
vtcombiner
Combines variants from gtenricher output and assigns cumulative p-values