Stephanie Georges's repositories
helper_scripts
Bash helper scripts used on CHPC - mostly related to rufus stuff
blt50
Analysis scripts for BLT50 RUFUS post-processing
referee
RUFUS rewrite
RUFUS
RUFUS k-mer based genomic variant detection
COLO829_analysis
Quarto notebook for visualizing COLO829 intersections
BMI6060_examples
Quarto examples from BMI6060
HCC1395_analysis
Quarto notebook for visualizing HCC1395 performance and intersections
rubybrown
Final project repository for ECE/CS 6780
helpers
Work helpers
vcfstatsalive
A utility that calculates statistics off a vcf stream, reporting at a given interval in json
gtenricher
multi-sample vcf filter for genotype enrichment
htslibpp
C++ wrapper around htslibpp, emphasizing on clean and functional interface
bedtools2
bedtools - the swiss army knife for genome arithmetic
PanelAppGE
Command line tool to nicely print Genomics England panel app results
ToyBrowser
Toy browser for CS6968
sankey-af-viz
Vue component for genomic pileup visualization. Built on igv.js
vtcombiner
Combines variants from gtenricher output and assigns cumulative p-values
poke-ref
A companion reference for Pokemon Go!
gearpacker
code for gear packer website