statgen / demuxlet

Genetic multiplexing of barcoded single cell RNA-seq

statgen/demuxlet Issues

Run demuxlet on data from PacBio
Closed 6 months ago
The total number of pass-filtered reads is too less
Updated 7 months ago9
terminate called after throwing an instance of 'std::bad_array_new_length'
Updated 7 months ago9
VCF file read bug
Updated 8 months ago2
Segmentation fault after initializing SAM reader
Updated 8 months ago2
Required depth for WGS
Updated 10 months ago
The demuxlet is running too slowly.
Updated 10 months ago
How to use microarray SNP data as reference genotypes in demuxlet?
Updated a year ago
Getting number of SNPs and SNP IDs used to assign each cell
Updated a year ago1
how to calculate raw reads count number for each genotype for a droplet.
Updated a year ago
install demuxlet
Updated a year ago1
SAM/BAM/CRAM file has 1 before 10, but VCF/BCF file has 1 after 10
Updated a year ago6
arrays for snp detection
Updated a year ago
demuxlet output first row is not contain the barcode information
Updated 2 years ago1
'assert' was not declared in this scope
Updated 2 years ago4
Segmentation fault
Closed 2 years ago6
not generating .best and .sing2 output files
Updated 2 years ago5
Using single-nuclear samples
Updated 2 years ago
Different Genotype arrays for demultiplexing samples
Updated 2 years ago1
Is there any example using demuxlet with scRNA-seq platforms other than 10x?
Updated 2 years ago
Installation failure
Updated 2 years ago1
installation problems
Updated 2 years ago8
Doublets overestimation
Updated 2 years ago2
Crash due to std::bad_alloc
Updated 2 years ago
WARNING: Cannot find AF field from INFO field in VCF file, now calculate AF from AC/AN. Segmentation fault
Updated 2 years ago2
installation issues
Updated 2 years ago
how to make GL/GP from SNP array data
Closed 3 years ago2
How to get VCF file from 10x Genomics 3' gene expression multiplexed library?
Closed 3 years ago1
Missing cell barcodes
Closed 3 years ago2
Understand demuxlet output
Closed 3 years ago
Explictly warn/fail when an indel is encountered
Updated 3 years ago3
Identify sex (contig ploidy) of samples
Updated 3 years ago
Demuxlet Output Questions
Updated 3 years ago2
installation issue
Updated 3 years ago2
demultiplex mixture of genotyped and non-genotyped samples
Updated 4 years ago
Test Run on Seqwell Datasets
Updated 4 years ago2
How to get 10x scATAC-seq VCF file
Updated 4 years ago
Get reliable singlets without a proper depth seq of one donor
Updated 4 years ago
demuxlet when genotype data is not available for one of the samples in the pool
Updated 4 years ago
demuxlet when genotype data is not available for one of the samples in the pool
Closed 4 years ago
Different Chromosomal Notation in VCF and BAM Files
Updated 4 years ago4
Understanding the naming of Doublets and Ambiguous barcodes
Updated 4 years ago
Install issue on Mac 10.14.6
Closed 4 years ago1
demuxlet usage
Updated 4 years ago
snATAC-Seq
Updated 4 years ago12
Install dependency problem with htslib
Updated 4 years ago2
exome genotypes from healthy cells to demultiplex tumor samples
Updated 4 years ago1
Core dumped after/during bcf_filtered_reader
Updated 4 years ago
Samples (almost) missing from results
Updated 4 years ago9
Does demuxlet support Red Hat linux?
Updated 5 years ago