stasys-hub

CCUT

Chromatin Capture Upsampling Toolbox - CCUT: A Versatile and unified Framework to Train Your Chromatin Capture Deep Learning Models

Collembola_AI

CollembolAI, a macrophotography and computer-vision workflow to digitize and characterize samples of soil invertebrates communities preserved in fluid.

basenji

Sequential regulatory activity predictions with deep convolutional neural networks.

AutoEq

Automatic headphone equalization from frequency responses

ayu-adwaita

DDNM

[ICLR 2023 Oral] Zero-Shot Image Restoration Using Denoising Diffusion Null-Space Model

deep-learning-papers

Deep learning paper reviews with PyTorch

dilated-attention-pytorch

(Unofficial) Implementation of dilated attention from "LongNet: Scaling Transformers to 1,000,000,000 Tokens" (https://arxiv.org/abs/2307.02486)

DNABERT

DNABERT: pre-trained Bidirectional Encoder Representations from Transformers model for DNA-language in genome

docker-4dn-hic

Docker for 4DN Hi-C processing pipeline

machine-learning-articles

🧠💬 Articles I wrote about machine learning, archived from MachineCurve.com.

neovim

My Neovim config

tutorials_ONT

voc2coco

Convert VOC format XMLs to COCO format json

enformer-pytorch

Implementation of Enformer, Deepmind's attention network for predicting gene expression, in Pytorch

mamba2-minimal

Minimal Mamba-2 implementation in PyTorch

pyrust-lib

pytorch-stable-diffusion

Stable Diffusion implemented from scratch in PyTorch

SCUNet

Practical Blind Denoising via Swin-Conv-UNet and Data Synthesis (Machine Intelligence Research 2023)

Uformer

[CVPR 2022] Official implementation of the paper "Uformer: A General U-Shaped Transformer for Image Restoration".