stasaki

speakeasyR

R package for SpeakEasy2

gwas-download

Easily download publicly available GWAS summary statistics.

PentaMind

hugo-clarity

A theme for Hugo based on VMware Clarity

deduplicate-text-datasets

flow-forecast

Deep learning PyTorch library for time series forecasting, classification, and anomaly detection (originally for flood forecasting).

scvi-tools

Deep probabilistic analysis of single-cell and spatial omics data

Parsec-Cloud-Preparation-Tool

Launch Parsec enabled cloud computers via your own cloud provider account.

pytorch_geometric

Graph Neural Network Library for PyTorch

graphsage-simple

Simple reference implementation of GraphSAGE.

ClusterGCN

A PyTorch implementation of "Cluster-GCN: An Efficient Algorithm for Training Deep and Large Graph Convolutional Networks" (KDD 2019).

vcf2diploid

personal genome constructor

GraphSAGE

Representation learning on large graphs using stochastic graph convolutions.

kipoi

Kipoi's model zoo API

models

Model zoo for genomics

BrainEpigenomeNN

Scripts used for analysis of data in paper, 'Neuronal brain region-specific DNA methylation and chromatin accessibility are associated with neuropsychiatric disease heritability'.

selene

a framework for training sequence-level deep learning networks

LibFM_in_Keras

This notebook shows how to implement LibFM in Keras and how it was used in the Talking Data competition on Kaggle.

deepchem

Democratizing Deep-Learning for Drug Discovery, Quantum Chemistry, Materials Science and Biology

biovec

A new approach for representing biological sequences

seq2vec

Transform sequence of words into a fix-length representation vector

dna2vec

dna2vec: Consistent vector representations of variable-length k-mers

Gene2vec

Vector space representation of genetic data

DeepCC

DeepCC: a novel deep learning-based framework for cancer molecular subtype classification

epistasisNet

Deep Learning to detect epistasis in the human genome.

SNP-deep-learning

deeplearning-biology

A list of deep learning implementations in biology

limix-tutorials

Limix tutorials and demos

ggsci

🦄 Scientific journal and sci-fi themed color palettes for ggplot2

gcn

Implementation of Graph Convolutional Networks in TensorFlow