stan-dot / xchemlab

A collection of services which comprise the XChemLab deployment

XChemLab

This repository contains a collection of services which comprise the XChemLab deployment.

Running

To run any of the services, simply execute cargo run -r <SERVICE_NAME>.

Note, deployments of the following ancillary services are required:

• An Open Policy Agent instance serving the polcies in /policies is for authentication & authorization.
• A PostgreSQL instance to provide a database backend for various services.
• A RabbitMQ instance to communicate between services and analysis workers (e.g. chimp_chomp).

Developing

A devcontainer docker-compose configuration is provided in .devcontainer to aid development. If developing in VSCode this can be activated with the Dev Containers extension (ms-vscode-remote.remote-containers).

Test Data

A helper script, collect_test_data.sh, is included. This can be used to collect copies of all recent SoakDB databases into the test_data directory.