problem at the step 4 with mysql-5.6.21
emlee413 opened this issue · comments
Problem at the step 4.
orthomclSoftware-v2.0.9/bin$ ./orthomclInstallSchema ../my_orthomcl_dir/orthomcl.config
DBI connect('orthomcl:mysql_local_infile=1:localhost:3307;mysql_read_default_file=/home/mylab/bin/mysql/mysql.cnf','orthomcl',...) failed: Access denied for user 'orthomcl'@'localhost' (using password: YES) at /home/mylab/bin/orthomclSoftware-v2.0.9/bin/../lib/perl/OrthoMCLEngine/Main/Base.pm line 56.
Do you have any suggestion on how to solve this? I'm really in basic level of orthoMCL.
Thanks.
this is not an official orthomcl source repo so I suggest contacting their team - but seems like your password is incorrect in the connections - I assume you configured orthomcl.config to have the username and password that works for your mysql connection?
I would also suggest a more standalone tool like OrthoFinder https://github.com/davidemms/OrthoFinder/releases for orthology which does not require a database behind it.
I will try also OrthoFinder. I'm seriously considering using that.
Anyway after getting your comment , I tried to change my dbLogin.
That works! Thank you so much.