orthomclBlastParser error

[Anu]

When I run orthomclBlastParser I get the error
Illegal division by zero at orthomclBlastParser line 116.

Do you have any suggestion on how to solve this?
Thanks in advance.

[Jason Stajich]

I would not use this code -use the formal releases from the OrthoMCL team or use OrthoFinder2 as a more modern and appropriate tool. --- Jason E Stajich, PhD Professor, Dept of Microbiology and Plant Pathology Chair, Academic Senate, Riverside Division University of California, Riverside Fellow, CIFAR Fungal Kingdom: Threats and Opportunities <https://www.cifar.ca/research/program/fungal-kingdom> email: [e-mail] twitter: @stajichlab <http://twitter.com/stajichlab> @hyphaltip <http://twitter.com/hyphaltip> @zygolife <http://twitter.com/zygolife> website: http://lab.stajich.org office: +1 951.827.2363 mobile: [phone]

…

On Mon, Nov 16, 2020 at 12:40 PM anu24s ***@***.***> wrote: When I run orthomclBlastParser I get the error Illegal division by zero at orthomclBlastParser line 116. Do you have any suggestion on how to solve this? Thanks in advance. — You are receiving this because you are subscribed to this thread. Reply to this email directly, view it on GitHub <#10>, or unsubscribe <https://github.com/notifications/unsubscribe-auth/AAAL5O54Q5KVSACILW5RSDTSQGE3PANCNFSM4TXVRTCQ> .

[Anu]

I am using customized version of OrthoMCL based on v2.0.9 and which is used within the OrthoMCL Pipeline.
My OrthoMCL Pipeline run got stopped in between, so from " Re-run orthoMCL-pipeline from a given stage ? #27 " , I started running orthomclBlastParser script using my blast results obtained.

I am clueless what to be done. where can I find formal releases from the OrthoMCL script?
Please help.

[Jason Stajich]

please don't use this sqlite version and I would contact the main authors and their site is here https://orthomcl.org/common/downloads/software/ https://orthomcl.org/orthomcl/ --- Jason E Stajich, PhD Professor, Dept of Microbiology and Plant Pathology Chair, Academic Senate, Riverside Division University of California, Riverside Fellow, CIFAR Fungal Kingdom: Threats and Opportunities <https://www.cifar.ca/research/program/fungal-kingdom> email: [e-mail] twitter: @stajichlab <http://twitter.com/stajichlab> @hyphaltip <http://twitter.com/hyphaltip> @zygolife <http://twitter.com/zygolife> website: http://lab.stajich.org office: +1 951.827.2363 mobile: [phone]

…

On Mon, Nov 16, 2020 at 1:00 PM anu24s ***@***.***> wrote: I am using customized version of OrthoMCL <http://orthomcl.org/common/downloads/software/v2.0/> based on v2.0.9 and which is used within the OrthoMCL Pipeline <https://github.com/apetkau/orthomcl-pipeline>. My OrthoMCL Pipeline run got stopped in between, so from " Re-run orthoMCL-pipeline from a given stage ? #27 " , I started running orthomclBlastParser script using my blast results obtained. I am clueless what to be done. where can I find formal releases from the OrthoMCL script? Please help. — You are receiving this because you were mentioned. Reply to this email directly, view it on GitHub <#10 (comment)>, or unsubscribe <https://github.com/notifications/unsubscribe-auth/AAAL5OY7HN2WXMGPB4WC7ULSQGHGTANCNFSM4TXVRTCQ> .

[Anu]

Hi, I solved the error myself by concatenating all the blast outputs into a single file. It worked fine after that.