Issues with Conda installation

[emmannaemeka]

emmannadi$ conda install -c bioconda fgmp
WARNING: The conda.compat module is deprecated and will be removed in a future release.
Collecting package metadata: done
Solving environment: failed

PackagesNotFoundError: The following packages are not available from current channels:

• fgmp -> augustus[version='>=3.2.3'] -> boost[version='>=1.70.0,<1.70.1.0a0']
• fgmp -> augustus[version='>=3.2.3'] -> gsl[version='>=2.5,<2.6.0a0']
• fgmp -> augustus[version='>=3.2.3'] -> libcblas[version='>=3.8.0,<4.0a0']
• fgmp -> augustus[version='>=3.2.3'] -> lp_solve
• fgmp -> augustus[version='>=3.2.3'] -> suitesparse[version='>=4.5.6,<5.0a0']

Current channels:

• https://conda.anaconda.org/bioconda/osx-64
• https://conda.anaconda.org/bioconda/noarch
• https://repo.anaconda.com/pkgs/main/osx-64
• https://repo.anaconda.com/pkgs/main/noarch
• https://repo.anaconda.com/pkgs/free/osx-64
• https://repo.anaconda.com/pkgs/free/noarch
• https://repo.anaconda.com/pkgs/r/osx-64
• https://repo.anaconda.com/pkgs/r/noarch

To search for alternate channels that may provide the conda package you're
looking for, navigate to

https://anaconda.org

and use the search bar at the top of the page.

[Ousmane H. Cisse]

which conda version do you have? Conda doesn’t seems to support Augustus v3.2.3 or at least some of its dependencies. Unfortunately, the v3.3.3 currently hosted in conda doesn't work well with FGMP. Try to install FGMP manually or try to install each of the dependencies.

Let me know how it went. Thanks for using FGMP

[emmannaemeka]

Getting Augustusv3.2.3 I found this link helpful osx-64/augustus-3.2.3-pl526hcfae127_5.tar.bz2 <https://anaconda.org/bioconda/augustus/3.2.3/download/osx-64/augustus-3.2.3-pl526hcfae127_5.tar.bz2> // anaconda.org/bioconda/augustus/3.2.3/download/osx-64/augustus-3.2.3-pl526hcfae127_5.tar.bz2 Nnadi Nnaemeka Emmanuel,Ph.D Department of Microbiology, Faculty of Natural and Applied Science, Plateau State University, Bokkos, Plateau State, Nigeria. [phone] Publications: https://www.researchgate.net/profile/Emmanuel_Nnadi/publications

…

On Wed, Nov 20, 2019 at 9:30 PM Ousmane H. Cisse ***@***.***> wrote: which conda version do you have? Conda doesn’t seems to support Augustus v3.2.3 or at least some of its dependencies. Unfortunately, the v3.3.3 currently hosted in conda doesn't work well with FGMP. Try to install FGMP manually or try to install each of the dependencies. Let me know how it went. Thanks for using FGMP — You are receiving this because you authored the thread. Reply to this email directly, view it on GitHub <#15?email_source=notifications&email_token=AHVLNZ32LZQIWYFW7DEUNLTQUWM67A5CNFSM4JPHO3M2YY3PNVWWK3TUL52HS4DFVREXG43VMVBW63LNMVXHJKTDN5WW2ZLOORPWSZGOEEUU4DY#issuecomment-556355087>, or unsubscribe <https://github.com/notifications/unsubscribe-auth/AHVLNZ6ZFB5D3AAGLQKL44DQUWM67ANCNFSM4JPHO3MQ> .

[Ousmane H. Cisse]

I think the problem is caused by Augustus installation. I am closing the issue but feel free to open a new one if the problem persists. Thanks