ssi-dk / bifrost_ssi_stamper

Bifrost Component: SSI Stamper - Runs SSI's QC check on samples using metrics generated from Assemblatron, Min Read Check and Whats my species

bifrost_ssi_stamper

This is a QC check on a sample after running the pre-requisite pipelines. It'll check against categories that the values are within defined ranges and is species dependant. These values in the future will be updated based off data we have on existing samples.

Programs: (see Dockerfile)

Summary of c run: (see pipeline.smk and config.yaml)