ssi-dk / bifrost

ssi-dk/bifrost Issues

Documentation link at readme.md yields a 404
Updated 2 years ago
chewBBACA component for Bifrost
Closed a year ago4
QC score
Updated 3 years ago4
Requirements not passed failing the component
Updated 4 years ago
Fix for bifrost_run_launcher test will affect other tests as calling run_program isn't neccesary or desired now
Closed 3 years ago
Adjust sample_component path to include final path not just sample path
Updated 4 years ago
Create version tag for all components and check dockerhub (update github actions)that it reflects properly
Closed 4 years ago1
turn bifrost into bifrostlib submodule and reporter submodule so that bifrost is just the collection and documentation organization
Closed 4 years ago
push newest bifrostlib to all components
Updated 4 years ago
Fix issue where a component requirement isn't working. Currently it's checking off it's own id and not that of the target.
Closed 4 years ago
Split tests into fast and slow (or unit/integration) so that the watchdog runs quick ones first and then bigger ones after for faster feedback loops
Updated 4 years ago
Update tests with new bifrostlib functionality
Updated 4 years ago
Update bifrostlib for samplecomponents to reflect schema2.0 and beyond, right now its more hardcoded for snakemake purposes
Updated 4 years ago
Add input species for components with a species requirement. This is so if the user changes the species the component still has info on which species it ran against
Updated 4 years ago
Download finders result for selected samples as csv
Updated 4 years ago
Columns can be added/hidden by the user
Updated 4 years ago
Clean up setup folder. shouldnt be needed but currently dockerfiles in others are pulling common resources from it. Should move those into the components (or base)
Closed 4 years ago
Change it so components can be re-installed onto themselves (for development adjustments to config.yaml) as deleting from DB to update is less than ideal.
Closed 4 years ago
Fix setup to install indexes for DB and species install.
Updated 4 years ago
create a docker for bifrost launcher
Closed 4 years ago1
Add old azure devops CI/CD into github actions
Updated 4 years ago1
Fix bug in container automation and add more for latest and dev
Closed 4 years ago
Create github actions for creating docker images on release tags
Closed 4 years ago
Mountable output folder for docker images
Updated 4 years ago
Run class not checking against run name properly
Closed 4 years ago
Establish test data set which can be attached via mongo atlas
Closed 4 years ago1
Add species interface for managing species and alias's
Closed 4 years ago
Update documentation to reflect schema2.0
Closed 5 months ago1
Convert user feedback into a sample component
Updated 4 years ago
Generate requirements for a validation set
Updated 4 years ago
Look into anonymization mappings for fields
Updated 4 years ago1
Add a interface for managing species and there mappings
Updated 4 years ago
Create github actions to automate testing
Closed 4 years ago
Adjust it so that components store installation path
Closed 4 years ago
Port over non public components for schema 2.0
Updated 4 years ago
Unify classes and api for different DB requests and api into one location
Updated 4 years ago
Add loading bars/spinners to data tables if possible
Updated 4 years ago
Look into showing contigs/coverage in a more intuitive way
Updated 4 years ago
Change data plots for QC to show a pregenerated density plot
Updated 4 years ago1
Adjust docker images to utilize a scratch folder
Updated 4 years ago1
Adjust components to have a unique name based on name, version, db_date
Updated 4 years ago
Add a wideview for the QC dashboard
Closed 4 years ago1
Ability to submit job requests to server from dashboard
Updated 4 years ago1
Run components on samples to fill out DB when server isn't busy
Updated 4 years ago
Add the functionality of 'tags' into bifrost
Updated 4 years ago
Have the run checker default to be sorted by sample name and supplying lab
Updated 4 years ago1
Create github shields for bifrost repo
Updated 4 years ago
API for checking run status
Updated 4 years ago
Ability to create a collection of runs through the UI
Updated 4 years ago
Add a clear job list button
Updated 4 years ago