EJ Song's repositories
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cptac_methylation
Methylation array analysis pipeline for CPTAC
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Fusion_hg38
Ding lab fusion hg38 Katmai pipeline
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HTAN_bulkRNA_expression
pipeline for HTAN bulk RNA-Seq data quantification
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MAESTER_WDL
WDL for MAESTER
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MSI_hg38
Ding Lab MSIsensor hg38 katmai pipeline
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msisensor
microsatellite instability detection using tumor only or paired tumor-normal data
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SurvivalGenie
SurvivalGenie for validation purpose
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vcf2maf
Convert a VCF into a MAF, where each variant is annotated to only one of all possible gene isoforms
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vicckb
python module for querying the vicc knowledgebase integration datastore
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WUDocker
Utilities for launching docker in various Washington University environments
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